BISC 303/CS 303 Bioinformatics Resources

 

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Resources

Yeast Genome Database:
http://www.yeastgenome.org

USC Sequence Alignment Server:
http://www-hto.usc.edu/software/seqaln/seqaln-query.html

BLAST:
http://www.ncbi.nlm.nih.gov/BLAST/

Gibbs Motif Sampler:
http://bayesweb.wadsworth.org/cgi-bin/gibbs.8.pl?data_type=DNA

GeneMark:
http://opal.biology.gatech.edu/GeneMark/hmmchoice.html

UniGene:
http://www.ncbi.nlm.nih.gov/UniGene

SAGE:
http://www.ncbi.nlm.nih.gov/SAGE

Multiple Alignments:
http://pbil.univ-lyon1.fr/alignment.html

Protein Data Bank:
http://www.rcsb.org/pdb/



References:

[1]

Altschul, S.F.
Fundamentals of database searching
Bioinformatics: A Trends Guide, 7-9, 1998.

[2]

Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J.
Basic Local Alignment Search Tool
Journal of Molecular Biology, 215: 403-410, 1990.

[3]

Eisen, Spellman, Brown, and Botstein
Cluster analysis and display of genome-wide expression patterns
Proc. Natl. Acad. Sci. USA, 95: 14863-14868, 1998.

[4]

Golub, Slonim, Tamayo, Huard, Gaasenbeek, Mesirov, Coller, Loh, Downing, Caligiuri, Bloomfield, and Lander
Molecular classification of cancer: class discovery and class prediction by gene expression monitoring
Science, 286: 531-537, 1999.

 

 

Maintained By: Professor Brian Tjaden
Department of Computer Science
Created By: Mirena Chausheva ‘04