Flick has written a nice tutorial for using CHIME
|
TEXT |
Principles of Biochemistry Lehninger, Nelson, Cox 3rd Ed |
|
CLASS |
WF 256 SC 11:10-12:20, T 12:30-1:20 |
|
OFFICE HOURS |
376A SC Mon & Thurs 1:30-3:00 |
We will be using the FirstClass conferencing system for announcements, daily questions, lab manuals etc.
First Class Help on the CWIS
CHIME: You will need to install a CHIME plug-in for your
Netscape Browser in order to see all the molecular visualizations for
class.. The public computers shoulld already have CHIME installed.
Installers can be found in our FirstClass
conference under tools or you can get it off the web:
Flick has written a nice
tutorial for using CHIME
A tutorial for the SWISS pdb viewer
RASMOL: You can down load RASMOL from its homepage or you can get it from FirstClass. class conference tools
SOURCES for molecules can be found at these links:
Molecules R Us will do a search of the protein data bank
PDB at a glance organizes interesting molecules by function
WebMolecules not too many proteins but a variety of molecules
SCOP & CATH organize proteins by their structure
Molecular Gallery brought to you by the Wellesley Chem Dept
ENTREZ does searches for both structures and literature
KLOTHO focuses on small molecules
TUPLS a comprehensive list of pharmaceuticals
mom more pharmaceuticals
LLL pharmaceuticals
GSU common biochemicals used in classes
CMU common biochemicals
UAriz
Spanish molecules
Italian molecules
CHIME tutorials
quick quizes 5-10 minutes every 1 or 2 weeks, 2 tests, a final, and an oral presentation of about 15-20 minutes.
aa/pH
struct
Test 1
Test 2
ave
A01609466
13
6
77.5
80.5
76.3
B20095941
18
9
92.5
95.5
92.7
B20132698
16
10
84
83.5
83.4.
B20036729
16
12
86
83
84.9
B20070633
17
10
90.5
88
88.6
B20088846
20
12
98
95.5
97.2
A01625152
19
11
91
92
91.8
B20067984
18
12
90
86
88.8
B20026991
14
8
91.5
87.5
86.6
B20064359
18
9
84
84
84.1
B20045634
15
11
87.5
97.5
90.9
B20135694
19
11
82.5
87.5
86.2
B20042500
20
10
83
78.5
82.5
B20127532
18
11
78.5
85.5
83.2
B20005242
19
8
92
81
86.2
average
17.3
10
87.2
87
86.8
My collection of biochemical
links
periodic table,
and another
